PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153712001
Common NameGSBRNA2T00153712001, LOC106447615
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 268aa    MW: 28721.1 Da    PI: 8.7656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153712001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.1e-39511521101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq++ 
  GSBRNA2T00153712001  51 PCGACKFLRRKCASGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVAA 140
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l++el+l++++l
  GSBRNA2T00153712001 141 LQSELSLVQSQL 152
                          ********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.32950152IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-3951149IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MADQLRSHNT SDSRRKSSAG KRTSLRTTTS SFSSGGAMAE TATTGTGTAS PCGACKFLRR  60
KCASGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLHHI PVNRRHDAVV TISYEAQARL  120
SDPVYGCVST ILALQQQVAA LQSELSLVQS QLVNSRVAMA NVMQQQQQQS HHHQQQQLVV  180
MQQPEYSNNS SASTMNRFTA TAAAAIGYDV MAPANLQHSL QPMPRHQQVT RNQHEDEEES  240
GADFSVAVGS TAVAAEVIFP AEGFHRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.10587e-66flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153712001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891850.0AC189185.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745038.10.0PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-139LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A078DUE50.0A0A078DUE5_BRANA; BnaC03g33510D protein
STRINGfgenesh1_pg.C_scaffold_30003011e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-104LOB domain-containing protein 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]